Gene: Seh1l ENSMUSG00000079614

Description

SEH1-like (S. cerevisiae [Source:MGI Symbol;Acc:MGI:1919374]

Gene Synonyms

2610007A16Rik

Location

Chromosome 18: 67,907,946-67,928,557 forward strand.

GRCm39:CM001011.3

About this gene

This gene has 2 transcripts (splice variants), 214 orthologues, 1 paralogue and is associated with 3 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025421.9	Seh1l-201	3542	360aa	ENSMUSP00000025421.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS50312	Q8R2U0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237700.2	Seh1l-202	1684	357aa	ENSMUSP00000157877.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8R2U0-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,