Gene: Mrpl42 ENSMUSG00000062981

Description

mitochondrial ribosomal protein L42 [Source:MGI Symbol;Acc:MGI:1333774]

Gene Synonyms

2700009F22Rik, 2900055D03Rik, D10Ertd322e, HSPC204, MRP-L31, PTD007, Rpml31

Location

Chromosome 10: 95,316,667-95,337,802 reverse strand.

GRCm39:CM001003.3

About this gene

This gene has 5 transcripts (splice variants) and 196 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000075829.3	Mrpl42-201	666	142aa	ENSMUSP00000075226.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24137	Q9CPV3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000218893.2	Mrpl42-203	661	142aa	ENSMUSP00000151636.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24137	Q9CPV3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000217777.2	Mrpl42-202	455	77aa	ENSMUSP00000151315.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1W2P6M3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000219019.2	Mrpl42-205	677	79aa	ENSMUSP00000151613.2	Nonsense mediated decay		A0A1W2P7E4	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000218996.2	Mrpl42-204	3277	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,