Gene: Sec31b ENSMUSG00000051984

Description

SEC31 homolog B, COPII coat complex component [Source:MGI Symbol;Acc:MGI:2685187]

Gene Synonyms

LOC240667, Sec31l2

Location

Chromosome 19: 44,505,396-44,534,303 reverse strand.

GRCm39:CM001012.3

About this gene

This gene has 3 transcripts (splice variants), 195 orthologues, 1 paralogue and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000063632.14	Sec31b-201	3939	1158aa	ENSMUSP00000064900.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37997	Q3TZ89	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000111985.2	Sec31b-202	3548	1001aa	ENSMUSP00000107616.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3TZ89-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000165758.2	Sec31b-203	503	59aa	ENSMUSP00000130598.2	Nonsense mediated decay		F6QFX0	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,