Gene: Fbxo28 ENSMUSG00000047539

Description

F-box protein 28 [Source:MGI Symbol;Acc:MGI:1261890]

Gene Synonyms

4833428J17Rik, 5730505P19Rik, D1Ertd578e, Fbx28

Location

Chromosome 1: 182,140,667-182,169,194 reverse strand.

GRCm39:CM000994.3

About this gene

This gene has 5 transcripts (splice variants), 217 orthologues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000051431.10	Fbxo28-201	4925	368aa	ENSMUSP00000054718.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS15588	Q8BIG4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000192544.6	Fbxo28-202	1407	126aa	ENSMUSP00000141838.2	Nonsense mediated decay		A0A0A6YX52	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000195061.6	Fbxo28-205	781	143aa	ENSMUSP00000141772.2	Nonsense mediated decay		A0A0A6YX00	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000194213.2	Fbxo28-204	747	195aa	ENSMUSP00000141219.2	Nonsense mediated decay		A0A0A6YVQ6	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000193700.2	Fbxo28-203	2676	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,