Gene: Shox2 ENSMUSG00000027833

Description

short stature homeobox 2 [Source:MGI Symbol;Acc:MGI:1201673]

Gene Synonyms

6330543G17Rik, Og12x, Prx3

Location

Chromosome 3: 66,879,060-66,889,104 reverse strand.

GRCm39:CM000996.3

About this gene

This gene has 5 transcripts (splice variants), 117 orthologues, 47 paralogues and is associated with 29 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000029422.14	Shox2-201	3079	331aa	ENSMUSP00000029422.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS17393	P70390	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000162098.9	Shox2-203	2645	240aa	ENSMUSP00000123838.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6UTR6	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000162060.9	Shox2-202	1537	190aa	ENSMUSP00000125031.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS79922	A0A140T8S9	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000162439.8	Shox2-204	1081	190aa	ENSMUSP00000124924.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS79922	A0A140T8S9	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000195261.2	Shox2-205	414	108aa	ENSMUSP00000141625.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0A6YWN6	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,