Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Vapa ENSMUSG00000024091

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Description

vesicle-associated membrane protein, associated protein A [Source:MGI Symbol;Acc:MGI:1353561]

Gene Synonyms

VAP33, synaptobrevin-associated protein of 33kDa

Location

Chromosome 17: 65,885,322-65,920,550 reverse strand.

GRCm39:CM001010.3

About this gene

This gene has 2 transcripts (splice variants), 253 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000024897.10	Vapa-201	3369	249aa	ENSMUSP00000024897.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS37677	Q9WV55	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000232686.2	Vapa-202	979	236aa	ENSMUSP00000156845.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A3B2W837	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data