Gene: Glycam1 ENSMUSG00000022491

Description

glycosylation dependent cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:95759]

Gene Synonyms

GlyCAM 1, Glycosylation-dependent cell adhesion molecule 1, Sele ligand, Sgp50

Location

Chromosome 15: 103,471,186-103,473,508 reverse strand.

GRCm39:CM001008.3

About this gene

This gene has 4 transcripts (splice variants), 35 orthologues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000023134.5	Glycam1-201	628	151aa	ENSMUSP00000023134.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27905	Q02596	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000228895.2	Glycam1-204	641	128aa	ENSMUSP00000153908.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BPT0	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000228060.2	Glycam1-203	528	149aa	ENSMUSP00000154735.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZNZ9	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000226679.2	Glycam1-202	2084	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-