Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
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Comparative Genomics
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Gene: Obi1 ENSMUSG00000022120

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Description

ORC ubiquitin ligase 1 [Source:MGI Symbol;Acc:MGI:1919736]

Gene Synonyms

2610206B13Rik, 2810449K13Rik, Rnf219

Location

Chromosome 14: 104,714,972-104,760,081 reverse strand.

GRCm39:CM001007.3

About this gene

This gene has 4 transcripts (splice variants) and 198 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022716.4	Obi1-201	3420	722aa	ENSMUSP00000022716.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27320	G3X8V5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000227640.2	Obi1-202	1632	235aa	ENSMUSP00000154694.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BRT6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000228448.2	Obi1-204	1056	214aa	ENSMUSP00000154655.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q8K2Y0-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000228210.2	Obi1-203	410	59aa	ENSMUSP00000153932.2	Nonsense mediated decay		A0A2I3BPV5	-

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data