Gene: Zc3h13 ENSMUSG00000022000

Description

zinc finger CCCH type containing 13 [Source:MGI Symbol;Acc:MGI:1914552]

Gene Synonyms

2600010B19Rik, 3110050K21Rik, 4930570G11Rik, C87618

Location

Chromosome 14: 75,521,813-75,581,866 forward strand.

GRCm39:CM001007.3

About this gene

This gene has 4 transcripts (splice variants), 157 orthologues and is associated with 16 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000227049.2	Zc3h13-203	6144	1730aa	ENSMUSP00000153882.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2I3BPQ5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSMUST00000022577.6	Zc3h13-201	6151	1729aa	ENSMUSP00000022577.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27278	E9Q784	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENSMUST00000228470.2	Zc3h13-204	730	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-
ENSMUST00000226417.2	Zc3h13-202	534	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-