Gene: Tmem42 ENSMUSG00000066233

Description

transmembrane protein 42 [Source:MGI Symbol;Acc:MGI:1277176]

Gene Synonyms

0610027O18Rik, 4933429E06Rik, D9Ertd662e

Location

Chromosome 9: 122,850,391-122,852,770 forward strand.

GRCm39:CM001002.3

About this gene

This gene has 4 transcripts (splice variants), 213 orthologues and is associated with 8 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000084733.7	Tmem42-201	1041	157aa	ENSMUSP00000081784.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS23652	Q9CR22	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000213514.2	Tmem42-202	631	129aa	ENSMUSP00000149571.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A1L1SRQ7	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000214785.2	Tmem42-204	449	54aa	ENSMUSP00000149811.2	Nonsense mediated decay		A0A1L1SS99	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000214077.2	Tmem42-203	415	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,