Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: Ddx17 ENSMUSG00000055065

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Description

DEAD box helicase 17 [Source:MGI Symbol;Acc:MGI:1914290]

Gene Synonyms

2610007K22Rik, A430025E01Rik, DEAD (Asp-Glu-Ala-Asp) box polypeptide 17, LOC381024, p72

Location

Chromosome 15: 79,411,937-79,430,942 reverse strand.

GRCm39:CM001008.3

About this gene

This gene has 4 transcripts (splice variants), 166 orthologues and 40 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000054014.9	Ddx17-201	4732	652aa	ENSMUSP00000055535.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS27643	Q3U741	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000229877.2	Ddx17-203	4726	650aa	ENSMUSP00000155307.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q501J6	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSMUST00000231053.2	Ddx17-204	3379	418aa	ENSMUSP00000155365.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q3TU25	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENSMUST00000229431.2	Ddx17-202	2821	407aa	ENSMUSP00000155737.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q501J6-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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