Gene: Tefm ENSMUSG00000046909

Description

transcription elongation factor, mitochondrial [Source:MGI Symbol;Acc:MGI:1915800]

Gene Synonyms

1110002N22Rik, FLJ22729

Location

Chromosome 11: 80,027,504-80,033,001 reverse strand.

GRCm39:CM001004.3

About this gene

This gene has 3 transcripts (splice variants), 189 orthologues and is associated with 3 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000050207.10	Tefm-201	1309	364aa	ENSMUSP00000059304.10	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS36241	Q5SSK3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000131601.2	Tefm-202	894	221aa	ENSMUSP00000114770.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7ZCA9	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000136996.2	Tefm-203	810	56aa	ENSMUSP00000122596.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F7CPB7	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,