Gene: Crlf1 ENSMUSG00000007888

Description

cytokine receptor-like factor 1 [Source:MGI Symbol;Acc:MGI:1340030]

Gene Synonyms

CLF-1, CRLM3, cytokine receptor like molecule 3

Location

Chromosome 8: 70,945,808-70,956,731 forward strand.

GRCm39:CM001001.3

About this gene

This gene has 3 transcripts (splice variants), 174 orthologues, 24 paralogues and is associated with 5 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000008032.14	Crlf1-201	1644	425aa	ENSMUSP00000008032.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS22369	Q9JM58	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000127983.2	Crlf1-202	544	118aa	ENSMUSP00000115614.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6T1W4	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSMUST00000132648.2	Crlf1-203	387	129aa	ENSMUSP00000119545.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F6RP70	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,