Summary
- Splice variants
- Transcript comparison
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Comparative Genomics
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- Orthologues
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Gene: 9330159F19Rik ENSMUSG00000004360

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Description

RIKEN cDNA 9330159F19 gene [Source:MGI Symbol;Acc:MGI:3036239]

Location

Chromosome 10: 29,087,602-29,106,775 forward strand.

GRCm39:CM001003.3

About this gene

This gene has 3 transcripts (splice variants) and 118 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000092627.6	9330159F19Rik-201	5681	648aa	ENSMUSP00000090291.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48527	D3Z623	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000213489.2	9330159F19Rik-202	2992	648aa	ENSMUSP00000151062.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS48527	D3Z623	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000213490.2	9330159F19Rik-203	3309	211aa	ENSMUSP00000149712.2	Nonsense mediated decay		A0A1L1SS16	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

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Strains

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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