Transcript: ENST00000676884.1

Description

Novel protein

Location

Chromosome 1: 226,870,184-226,983,855 forward strand.

About this transcript

This transcript has 28 exons, is annotated with 1 domain and feature, is associated with 52451 variant alleles and maps to 1468 oligo probes.

Gene

This transcript is a product of gene ENSG00000288674.1 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000366779.6	-	9497	448aa	ENSP00000355741.2	Nonsense mediated decay	CCDS1556	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000676884.1	-	8124	448aa	ENSP00000503200.1	Nonsense mediated decay	CCDS1556	-	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 28, Coding exons: 10, Transcript length: 8,124 bps, Translation length: 448 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS1556

Version

ENST00000676884.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000676884.1

Summary

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Transcript: ENST00000676884.1

Summary

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