Transcript: ENST00000639258.1 CANX-259

Description

calnexin [Source:HGNC Symbol;Acc:HGNC:1473]

Gene Synonyms

CNX, IP90, P90

Location

Scaffold HG30_PATCH: 464,542-494,262 forward strand.

About this transcript

This transcript has 14 exons, is associated with 19485 variant alleles and maps to 820 oligo probes.

Gene

This transcript is a product of gene ENSG00000283777.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000638706.2	CANX-253	4915	592aa	ENSP00000492868.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P27824-1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000639938.1	CANX-261	4207	592aa	ENSP00000491760.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P27824-1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000638425.1	CANX-250	2232	592aa	ENSP00000492372.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P27824-1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000639990.1	CANX-262	1000	308aa	ENSP00000491355.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000638222.1	CANX-249	825	134aa	ENSP00000492566.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000638701.1	CANX-252	727	107aa	ENSP00000491455.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000639152.1	CANX-258	592	131aa	ENSP00000491502.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000638584.1	CANX-251	585	144aa	ENSP00000491696.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000640498.1	CANX-265	582	78aa	ENSP00000492099.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000639033.1	CANX-256	570	168aa	ENSP00000491503.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000640455.1	CANX-264	569	32aa	ENSP00000492478.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000638713.1	CANX-254	568	189aa	ENSP00000492453.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000639333.1	CANX-260	511	170aa	ENSP00000492563.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000639258.1	CANX-259	1876	96aa	ENSP00000492814.1	Nonsense mediated decay	-	-	-
ENST00000640950.1	CANX-266	533	61aa	ENSP00000492040.1	Nonsense mediated decay	-	-	-
ENST00000638860.1	CANX-255	592	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000638177.1	CANX-248	345	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined	-	-	-
ENST00000640215.1	CANX-263	549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-
ENST00000639130.1	CANX-257	485	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 14, Coding exons: 3, Transcript length: 1,876 bps, Translation length: 96 residues

Version

ENST00000639258.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000639258.1 CANX-259

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000639258.1 CANX-259

Summary

About Us

Get help

Our sister sites

Follow us