Transcript: ENST00000612467.1 PCDHGA3-202

Description

protocadherin gamma subfamily A, 3 [Source:HGNC Symbol;Acc:HGNC:8701]

Gene Synonyms

PCDH-GAMMA-A3

Location

Chromosome 5: 141,344,034-141,511,183 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 88504 variant alleles and maps to 739 oligo probes.

Gene

This transcript is a product of gene ENSG00000254245.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000253812.8	PCDHGA3-201	4806	932aa	ENSP00000253812.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47290	Q9Y5H0-1	NM_018916.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000619750.1	PCDHGA3-203	2695	829aa	ENSP00000479265.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS75329	Q9Y5H0-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000612467.1	PCDHGA3-202	2712	107aa	ENSP00000481801.1	Nonsense mediated decay		A0A087WYH2	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 2,712 bps, Translation length: 107 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000612467.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000612467.1 PCDHGA3-202

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Transcript: ENST00000612467.1 PCDHGA3-202

Summary

About Us

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