Transcript: ENST00000616847.1 POTEM-203

Description

POTE ankyrin domain family member M [Source:HGNC Symbol;Acc:HGNC:37096]

Gene Synonyms

ACT, P704P, POTE14BETA

Location

Chromosome 14: 18,967,434-18,999,012 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 1 domain and feature, is associated with 15771 variant alleles and maps to 1842 oligo probes.

Gene

This transcript is a product of gene ENSG00000222036.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000547889.6	POTEM-201	6666	508aa	ENSP00000448062.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS73609	A6NI47	NM_001145442.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000552966.5	POTEM-202	2073	322aa	ENSP00000448581.1	Nonsense mediated decay		A0A0H2UH41	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000616847.1	POTEM-203	1975	486aa	ENSP00000483980.1	Nonsense mediated decay		A0A087X187	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 12, Coding exons: 11, Transcript length: 1,975 bps, Translation length: 486 residues

Transcript Support Level (TSL)

TSL:1

Version

ENST00000616847.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000616847.1 POTEM-203

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Transcript: ENST00000616847.1 POTEM-203

Summary

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