Transcript: ENST00000580987.1 RAB12-201

Description

RAB12, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:31332]

Location

Chromosome 18: 8,632,859-8,635,567 forward strand.

About this transcript

This transcript has 2 exons, is associated with 1141 variant alleles and maps to 99 oligo probes.

Gene

This transcript is a product of gene ENSG00000206418.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000649141.2	RAB12-202	2147	340aa	ENSP00000497886.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42410	A0A3B3ITT1	NM_001025300.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000580987.1	RAB12-201	504	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 504 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000580987.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000580987.1 RAB12-201

Summary

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Transcript: ENST00000580987.1 RAB12-201

Summary

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