Description

ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]

Synonyms

bA145L22, bA145L22.2, C6orf40, ZNF698

Location
About this transcript

This transcript has 4 exons, is annotated with 25 domains and features, is associated with 197 variations and maps to 34 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
ZFP57-002ENST000004887571870536aaENSP00000418259
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS43436Q9NU63 NM_001109809
NP_001103279
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

ZFP57-001ENST000003768831980516aaENSP00000366080
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9NU63 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

ZFP57-201ENST000003768811359452aaENSP00000366078
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9NU63 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 4 Coding exons: 4 Transcript length: 1,870 bps Translation length: 536 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS43436

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NU63

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000488757.4

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays