Description

POU class 5 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:9221]

Synonyms

MGC22487, OCT3, Oct4, OTF3

Location
Gene

This transcript is a product of gene ENSG00000204531

This gene has 9 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
POU5F1-005ENST000005134072276164 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS75420F2Z381 NM_001285986
NP_001272915
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
POU5F1-002ENST000004715291723164 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS75420F2Z381 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
POU5F1-202ENST000006200311578190 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS47398F2Z381 U3KQH6 NM_001173531
NM_001285987
NM_203289
NP_001167002
NP_001272916
NP_976034
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
POU5F1-001ENST000002599151420360 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34391B5B8N7 B5B8N8 B5B8N9
B5B8P0 B5B8P1 B5B8P2
B5B8P3 B5B8P4 B5B8P6
B5B8P7 B5B8P8 B5B8P9
B5B8Q0 B5B8Q1 B5B8Q2
B5B8Q4 D2IYK3 F2Z381
Q01860 U3KQH6
NM_002701
NP_002692
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
POU5F1-007ENST000006065671236190 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS47398F2Z381 U3KQH6 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
POU5F1-006ENST000005128181233164 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS75420F2Z381 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
POU5F1-004ENST000004418881055164 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS75420F2Z381 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
POU5F1-201ENST000006193401084186 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B5B8N7 B5B8N8 B5B8N9
B5B8P0 B5B8P1 B5B8P2
B5B8P3 B5B8P4 B5B8P6
B5B8P7 B5B8P8 B5B8P9
B5B8Q0 B5B8Q1 B5B8Q2
B5B8Q4
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
POU5F1-003ENST00000461401791No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 3 Coding exons: 3 Transcript length: 2,276 bps Translation length: 164 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS75420

Transcript Support Level

2

Ensembl version

ENST00000513407.1

Type

Putative protein coding

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
Annotation Attributes

retained intron first [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays