Description

laminin, beta 3 [Source:HGNC Symbol;Acc:HGNC:6490]

Synonyms

BM600-125kDa, kalinin-140kDa, LAMNB1, nicein-125kDa

About this transcript

This transcript has 6 exons, is annotated with 6 domains and features, is associated with 91 variations and maps to 3 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
LAMB3-201ENST0000039191143051172aaENSP00000375778
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1487Q13751 NM_001017402
NP_001017402
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
LAMB3-001ENST0000035608240551172aaENSP00000348384
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1487Q13751 NM_000228
NP_000219
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
LAMB3-002ENST0000036703039311172aaENSP00000355997
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1487Q13751 NM_001127641
NP_001121113
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
LAMB3-003ENST00000415782908188aaENSP00000388960
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5THA1 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

LAMB3-004ENST00000455193710160aaENSP00000398683
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-X1WI29 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 6 Coding exons: 5 Transcript length: 908 bps Translation length: 188 residues

Transcript Support Level (TSL)

TSL:2

Ensembl version

ENST00000415782.1

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays