Description

transcription factor 4 [Source:HGNC Symbol;Acc:HGNC:11634]

Synonyms

bHLHb19, E2-2, ITF2, SEF2-1B

Location
Gene

This transcript is a product of gene ENSG00000196628

This gene has 48 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
TCF4-201ENST000003544528332671 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS42438A0A075B723 G0LNT3 G0LNT4
G0LNT7 G0LNT8 H3BMC8
H3BME8 H3BNI2 H3BNZ2
H3BP59 H3BPG3 H3BRF7
H3BSP7 H3BT24 H3BTC3
H3BTM9 H3BUQ3 P15884
NM_001083962
NP_001077431
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
TCF4-002ENST000003560738317667 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11960A0A024R2C0 A0A075B723 G0LNT3
G0LNT4 G0LNT7 G0LNT8
H3BMC8 H3BME8 H3BNI2
H3BNZ2 H3BP59 H3BPG3
H3BRF7 H3BSP7 H3BT24
H3BTC3 H3BTM9 H3BUQ3
P15884
NM_003199
NP_003190
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
TCF4-003ENST000005375782745647 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58629A0A075B723 G0LNT3 G0LNT7
G0LNT8 H3BMC8 H3BME8
H3BNI2 H3BNZ2 H3BP59
H3BPG3 H3BRF7 H3BSP7
H3BT24 H3BTC3 H3BTM9
H3BUQ3 P15884
NM_001243227
NP_001230156
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-019ENST000005644032660677 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58630G0LNT3 G0LNT4 H3BMC8
H3BME8 H3BNI2 H3BP59
H3BRF7 H3BTC3 H3BTP3
H3BUQ3
NM_001243228
NP_001230157
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI2APPRIS candidate principal isoform (longest CCDS)
Glossary entry for APPRIS
APPRIS website
TCF4-004ENST000003983392478773 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58631A0A075B723 G0LNT3 G0LNT4
G0LNT7 G0LNT8 H3BMC8
H3BME8 H3BNI2 H3BNZ2
H3BP59 H3BPG3 H3BRF7
H3BSP7 H3BT24 H3BTC3
H3BTM9 H3BUQ3
NM_001243226
NP_001230155
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-015ENST000004574822438511 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58624P15884 NM_001243234
NP_001230163
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
TCF4-001ENST000005650182411671 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS42438A0A075B723 G0LNT3 G0LNT4
G0LNT7 G0LNT8 H3BMC8
H3BME8 H3BNI2 H3BNZ2
H3BP59 H3BPG3 H3BRF7
H3BSP7 H3BT24 H3BTC3
H3BTM9 H3BUQ3 P15884
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
TCF4-008ENST000005686732403647 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58629A0A075B723 G0LNT3 G0LNT7
G0LNT8 H3BMC8 H3BME8
H3BNI2 H3BNZ2 H3BP59
H3BPG3 H3BRF7 H3BSP7
H3BT24 H3BTC3 H3BTM9
H3BUQ3 P15884
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-006ENST000005649992401667 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11960A0A024R2C0 A0A075B723 G0LNT3
G0LNT4 G0LNT7 G0LNT8
H3BMC8 H3BME8 H3BNI2
H3BNZ2 H3BP59 H3BPG3
H3BRF7 H3BSP7 H3BT24
H3BTC3 H3BTM9 H3BUQ3
P15884
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
TCF4-009ENST000005430822396625 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58628G0LNT7 G0LNT8 H3BNI2
H3BNZ2 H3BPG3 H3BRF7
H3BSP7 H3BTM9 P15884
NM_001243231
NP_001230160
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-011ENST000005442412264600 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58627G0LNT7 G0LNT8 H3BNZ2
H3BPG3 H3BRF7 H3BSP7
H3BTM9 P15884
NM_001243232
NP_001230161
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-010ENST000005619922184537 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58626G0LNT7 G0LNT8 H3BNZ2
H3BPG3 H3BRF7 H3BSP7
H3BTM9 P15884
NM_001243233
NP_001230162
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-041ENST000005662862119664 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS59321A0A075B723 G0LNT3 G0LNT5
G0LNT7 G0LNT8 H3BMC8
H3BME8 H3BNI2 H3BNZ2
H3BP59 H3BPG3 H3BRF7
H3BSP7 H3BT24 H3BTC3
H3BTM9 H3BUQ3 P15884
NM_001243230
NP_001230159
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-013ENST000005378561929537 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58626G0LNT7 G0LNT8 H3BNZ2
H3BPG3 H3BRF7 H3BSP7
H3BTM9 P15884
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-044ENST000005702871896507 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58625P15884 NM_001243235
NP_001230164
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
TCF4-012ENST000005701771872537 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58626G0LNT7 G0LNT8 H3BNZ2
H3BPG3 H3BRF7 H3BSP7
H3BTM9 P15884
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-016ENST000005618311823507 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58623P15884 NM_001243236
NP_001230165
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-202ENST000006160538140583 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT3 H3BME8 P15884
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-005ENST000005687402620642 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT3 G0LNT7 G0LNT8
H3BME8 H3BNZ2 H3BPG3
H3BPJ7 H3BRF7 H3BSP7
H3BTM9
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-007ENST000005409992572643 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A075B723 G0LNT3 G0LNT7
G0LNT8 H3BMC8 H3BME8
H3BNI2 H3BNZ2 H3BP59
H3BPG3 H3BRF7 H3BSP7
H3BT24 H3BTC3 H3BTM9
H3BUQ3 P15884
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-045ENST000005662792128611 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT3 H3BME8 P15884
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-046ENST000005678801948607 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT3 H3BME8 P15884
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-042ENST000005642281915596 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT7 G0LNT8 H3BNZ2
H3BPG3 H3BRF7 H3BSP7
H3BTM9 P15884
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TCF4-021ENST00000568169870280 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A075B723 G0LNT1 G0LNT3
G0LNT7 G0LNT8 H3BMC8
H3BME8 H3BNI2 H3BNZ2
H3BP59 H3BRF7 H3BSP7
H3BTC3 H3BTM9 H3BTZ0
H3BUQ3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-027ENST00000566514843265 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A075B723 G0LNT3 G0LNT7
G0LNT8 H3BMC8 H3BME8
H3BNI2 H3BNZ2 H3BP59
H3BRF7 H3BSP7 H3BT24
H3BTC3 H3BTM9 H3BUQ3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-024ENST00000565908752209 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A075B723 G0LNT3 H3BMC8
H3BME8 H3BNI2 H3BP59
H3BRF7 H3BTC3 H3BUQ3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-038ENST00000570146661166 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-033ENST00000568186632119 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT7 G0LNT8 H3BRF7
H3BSP7 H3BTM9
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-029ENST0000056284759756 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BNI2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-035ENST00000562607594123 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT7 G0LNT8 H3BNZ2
H3BRF7 H3BSP7 H3BTM9
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-032ENST00000566777588113 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT8 H3BRF7 H3BTM9
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-025ENST00000563888581144 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT3 H3BMC8 H3BME8
H3BNI2 H3BUQ3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-022ENST0000056935757899 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT3 H3BME8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-023ENST00000564343568135 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT3 H3BMC8 H3BME8
H3BNI2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-034ENST00000569012561163 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT7 G0LNT8 H3BNZ2
H3BPG3 H3BRF7 H3BSP7
H3BTM9
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-028ENST00000563824557157 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT3 H3BMC8 H3BME8
H3BNI2 H3BP59 H3BTC3
H3BUQ3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-026ENST00000568147550153 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT3 H3BMC8 H3BME8
H3BNI2 H3BP59 H3BUQ3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-020ENST00000565124532160 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT2 G0LNT3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-014ENST0000056203051553 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BRF7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-040ENST00000562543492139 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT3 G0LNT4 H3BME8
H3BNI2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-047ENST0000059081045454 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BRF7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-043ENST00000562638401119 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT7 G0LNT8 H3BRF7
H3BSP7 H3BTM9
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-039ENST00000565393314105 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G0LNT2 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-037ENST00000563760851No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-036ENST00000566376463No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-030ENST00000565580298No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-017ENST000005636866019No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TCF4-018ENST000005626805354No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 16 Coding exons: 15 Transcript length: 2,264 bps Translation length: 600 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS58627

Uniprot

This transcript corresponds to the following Uniprot identifiers: P15884

Transcript Support Level

2

Ensembl version

ENST00000544241.4

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays