Human (GRCh38.p14)
Description

CLN3 lysosomal/endosomal transmembrane protein, battenin [Source:HGNC Symbol;Acc:HGNC:2074]

Gene Synonyms

BTN1, BTS, JNCL

Location
About this transcript

This transcript has 13 exons, is associated with 7781 variant alleles and maps to 840 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000636147.2CLN3-2431685438aaENSP00000490105.1
 
Protein coding
CCDS10632Q13286-1 NM_001042432.2MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000569430.7CLN3-2385765438aaENSP00000454229.1
 
Protein coding
CCDS10632Q13286-1 -GENCODE basicAPPRIS P1TSL:5
ENST00000359984.12CLN3-2051876438aaENSP00000353073.9
 
Protein coding
CCDS10632Q13286-1 -GENCODE basicAPPRIS P1TSL:1
ENST00000360019.8CLN3-2061841414aaENSP00000353116.3
 
Protein coding
CCDS73855Q13286-7 -GENCODE basicTSL:2
ENST00000357857.14CLN3-2041720384aaENSP00000350523.9
 
Protein coding
CCDS73854B4DFF3 -GENCODE basicTSL:2
ENST00000333496.14CLN3-2011608414aaENSP00000329171.9
 
Protein coding
CCDS73855Q13286-7 -GENCODE basicTSL:5
ENST00000357806.11CLN3-2031469339aaENSP00000350457.7
 
Protein coding
Q13286-6 -GENCODE basicTSL:1
ENST00000567963.6CLN3-2291452384aaENSP00000455387.2
 
Protein coding
CCDS73854B4DFF3 -GENCODE basicTSL:5
ENST00000395653.9CLN3-2071430285aaENSP00000379014.5
 
Protein coding
F6TI76 -GENCODE basicTSL:5
ENST00000565316.6CLN3-2161318421aaENSP00000456117.1
 
Protein coding
Q13286-3 -GENCODE basicTSL:1
ENST00000637100.1CLN3-2541284370aaENSP00000490394.1
 
Protein coding
A0A1B0GV71 -GENCODE basicTSL:5
ENST00000636228.1CLN3-2451224336aaENSP00000489627.1
 
Protein coding
O95086 -GENCODE basicTSL:1
ENST00000355477.10CLN3-2021173390aaENSP00000347660.7
 
Protein coding
Q13286-2 -GENCODE basicTSL:1
ENST00000635973.1CLN3-2421084269aaENSP00000490363.1
 
Protein coding
A0A1B0GV41 -TSL:5CDS 3' incomplete
ENST00000568443.2CLN3-232969228aaENSP00000454899.2
 
Protein coding
H3BNK7 -TSL:3CDS 3' incomplete
ENST00000568497.6CLN3-23575828aaENSP00000456414.2
 
Protein coding
H3BRU8 -TSL:3CDS 3' incomplete
ENST00000565778.6CLN3-219688167aaENSP00000458015.1
 
Protein coding
O95090 -TSL:1CDS 3' incomplete
ENST00000565688.5CLN3-218650176aaENSP00000456122.1
 
Protein coding
H3BR84 -TSL:3CDS 3' incomplete
ENST00000568558.6CLN3-236634176aaENSP00000455603.2
 
Protein coding
H3BQ48 -TSL:5CDS 3' incomplete
ENST00000567804.1CLN3-22855774aaENSP00000455365.1
 
Protein coding
H3BPL0 -TSL:4CDS 3' incomplete
ENST00000637107.1CLN3-2551946182aaENSP00000490248.1
 
Nonsense mediated decay
A0A1B0GUU4 -TSL:5
ENST00000637184.1CLN3-2571753363aaENSP00000489952.1
 
Nonsense mediated decay
A0A1B0GW34 -TSL:5
ENST00000637871.1CLN3-2611606131aaENSP00000490670.1
 
Nonsense mediated decay
Q9UP10 -TSL:5
ENST00000637578.1CLN3-258157777aaENSP00000490206.1
 
Nonsense mediated decay
A0A1B0GUB1 -TSL:2
ENST00000636172.1CLN3-2441536131aaENSP00000490505.1
 
Nonsense mediated decay
Q9UP10 -TSL:2
ENST00000635861.1CLN3-240140477aaENSP00000490034.1
 
Nonsense mediated decay
A0A1B0GUB1 -TSL:5
ENST00000637699.1CLN3-2601228181aaENSP00000490049.1
 
Nonsense mediated decay
Q9UBD8 -TSL:2
ENST00000565140.5CLN3-2141225181aaENSP00000455342.1
 
Nonsense mediated decay
Q9UBD8 -TSL:2
ENST00000628023.3CLN3-239118382aaENSP00000486178.1
 
Nonsense mediated decay
A0A0D9SF04 -TSL:5
ENST00000568422.6CLN3-2311168181aaENSP00000455549.2
 
Nonsense mediated decay
Q9UBD8 -TSL:5
ENST00000569030.5CLN3-2371109253aaENSP00000454680.1
 
Nonsense mediated decay
Q13286-5 -TSL:2
ENST00000566057.5CLN3-221931105aaENSP00000456693.1
 
Nonsense mediated decay
Q9UBH5 -TSL:1
ENST00000564091.6CLN3-211790218aaENSP00000454466.2
 
Nonsense mediated decay
H3BMN4 -TSL:5CDS 5' incomplete
ENST00000567495.6CLN3-227769155aaENSP00000456013.2
 
Nonsense mediated decay
H3BR00 -TSL:5
ENST00000637985.1CLN3-26276452aaENSP00000490932.1
 
Nonsense mediated decay
A0A1B0GWH8 -TSL:5
ENST00000561505.2CLN3-20849553aaENSP00000457615.2
 
Nonsense mediated decay
H3BUF8 -TSL:1
ENST00000636355.1CLN3-247975No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000567160.1CLN3-226616No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000565236.1CLN3-215582No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000566816.1CLN3-224570No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000637110.1CLN3-256565No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000566472.1CLN3-223551No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000566040.1CLN3-220544No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000637686.1CLN3-259533No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000565047.1CLN3-213461No protein-
 
Protein coding CDS not defined
--TSL:1
ENST00000563874.5CLN3-2103081No protein-
 
Retained intron
--TSL:2
ENST00000636977.1CLN3-2522969No protein-
 
Retained intron
--TSL:5
ENST00000636853.1CLN3-2502289No protein-
 
Retained intron
--TSL:5
ENST00000636839.1CLN3-2492018No protein-
 
Retained intron
--TSL:5
ENST00000568076.6CLN3-2301968No protein-
 
Retained intron
--TSL:5
ENST00000561689.6CLN3-2091957No protein-
 
Retained intron
--TSL:2
ENST00000635958.1CLN3-2411837No protein-
 
Retained intron
--TSL:5
ENST00000637050.1CLN3-2531684No protein-
 
Retained intron
--TSL:5
ENST00000636907.1CLN3-2511679No protein-
 
Retained intron
--TSL:2
ENST00000568452.6CLN3-2331616No protein-
 
Retained intron
--TSL:5
ENST00000566083.6CLN3-2221409No protein-
 
Retained intron
--TSL:2
ENST00000566824.6CLN3-2251326No protein-
 
Retained intron
--TSL:5
ENST00000636351.1CLN3-2461292No protein-
 
Retained intron
--TSL:5
ENST00000564574.5CLN3-2121159No protein-
 
Retained intron
--TSL:2
ENST00000568472.6CLN3-2341011No protein-
 
Retained intron
--TSL:3
ENST00000636685.1CLN3-248801No protein-
 
Retained intron
--TSL:5
ENST00000565354.5CLN3-217759No protein-
 
Retained intron
--TSL:5
Statistics

Exons: 13, Coding exons: 0, Transcript length: 1,968 bps,

Transcript Support Level (TSL)

TSL:5

Version

ENST00000568076.6

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]