Transcript: ENST00000643778.1 SLITRK6-201

Description

SLIT and NTRK like family member 6 [Source:HGNC Symbol;Acc:HGNC:23503]

Gene Synonyms

FLJ22774

Location

Chromosome 13: 85,793,874-85,806,683 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 39 domains and features, is associated with 6560 variant alleles and maps to 209 oligo probes.

Gene

This transcript is a product of gene ENSG00000184564.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000647374.2	SLITRK6-203	4249	841aa	ENSP00000495507.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41903	Q9H5Y7	NM_032229.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000643778.1	SLITRK6-201	2885	841aa	ENSP00000496428.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41903	Q9H5Y7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000645642.1	SLITRK6-202	551	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 1, Transcript length: 2,885 bps, Translation length: 841 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H5Y7

CCDS

This transcript is a member of the Human CCDS set: CCDS41903

Version

ENST00000643778.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000643778.1 SLITRK6-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000643778.1 SLITRK6-201

Summary

About Us

Get help

Our sister sites

Follow us