Transcript: ENST00000649177.1 TNFAIP8L3-203

Description

TNF alpha induced protein 8 like 3 [Source:HGNC Symbol;Acc:HGNC:20620]

Gene Synonyms

FLJ41287

Location

Chromosome 15: 51,056,677-51,094,501 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 4 domains and features, is associated with 14968 variant alleles and maps to 178 oligo probes.

Gene

This transcript is a product of gene ENSG00000183578.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000637513.2	TNFAIP8L3-202	2206	204aa	ENSP00000489743.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS81881	A0A1B0GTK8	NM_001311175.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000327536.5	TNFAIP8L3-201	2262	292aa	ENSP00000328016.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32241	Q5GJ75	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000649177.1	TNFAIP8L3-203	1858	158aa	ENSP00000498365.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494C051	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 1,858 bps, Translation length: 158 residues

Version

ENST00000649177.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000649177.1 TNFAIP8L3-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000649177.1 TNFAIP8L3-203

Summary

About Us

Get help

Our sister sites

Follow us