Transcript: ENST00000579243.1 USH1G-201

Description

USH1 protein network component sans [Source:HGNC Symbol;Acc:HGNC:16356]

Gene Synonyms

ANKS4A, FLJ33924, SANS

Location

Chromosome 17: 74,917,916-74,923,256 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 1 domain and feature, is associated with 3105 variant alleles and maps to 152 oligo probes.

Gene

This transcript is a product of gene ENSG00000182040.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000614341.5	USH1G-202	3558	461aa	ENSP00000480279.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32725	Q495M9	NM_173477.5	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000579243.1	USH1G-201	1673	115aa	ENSP00000462568.1	Nonsense mediated decay		J3KSN5	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 1,673 bps, Translation length: 115 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000579243.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000579243.1 USH1G-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000579243.1 USH1G-201

Summary

About Us

Get help

Our sister sites

Follow us