Description

forkhead box N2 [Source:HGNC Symbol;Acc:HGNC:5281]

Synonyms

HTLF

Location
About this transcript

This transcript has 5 exons, is annotated with 7 domains and features, is associated with 65 variations and maps to 10 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
FOXN2-001ENST000003405535408431aaENSP00000343633
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1838P32314 NM_002158
NP_002149
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

FOXN2-201ENST000006168441414340aaENSP00000484534
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087X1X6 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FOXN2-002ENST00000413569932246aaENSP00000388486
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JTA7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 5 Coding exons: 4 Transcript length: 932 bps Translation length: 246 residues

Transcript Support Level (TSL)

TSL:3

Ensembl version

ENST00000413569.4

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays