Description

pancreas specific transcription factor, 1a [Source:HGNC Symbol;Acc:HGNC:23734]

Synonyms

bHLHa29, PTF1-p48

Location
About this transcript

This transcript has 2 exons, is annotated with 9 domains and features, is associated with 77 variations and maps to 24 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PTF1A-001ENST000003765041537328aaENSP00000365687
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7143Q7RTS3 NM_178161
NP_835455
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 2 Coding exons: 2 Transcript length: 1,537 bps Translation length: 328 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS7143

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q7RTS3

Transcript Support Level (TSL)

TSL:2

Ensembl version

ENST00000376504.3

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays