Transcript: ENST00000413942.1 TEF-203

Description

TEF transcription factor, PAR bZIP family member [Source:HGNC Symbol;Acc:HGNC:11722]

Gene Synonyms

KIAA1655

Location

Chromosome 22: 41,382,935-41,394,274 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 7 domains and features, is associated with 5627 variant alleles and maps to 213 oligo probes.

Gene

This transcript is a product of gene ENSG00000167074.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000266304.9	TEF-201	4381	303aa	ENSP00000266304.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14014	Q10587-1	NM_003216.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000406644.7	TEF-202	4386	273aa	ENSP00000385256.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46716	Q10587-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000413942.1	TEF-203	551	184aa	ENSP00000411170.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y797	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 551 bps, Translation length: 184 residues

Transcript Support Level (TSL)

TSL:4

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000413942.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000413942.1 TEF-203

Summary

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Transcript: ENST00000413942.1 TEF-203

Summary

About Us

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