Description

paired-like homeobox 2a [Source:HGNC Symbol;Acc:HGNC:691]

Synonyms

ARIX, CFEOM2, FEOM2, PMX2A

Location
About this transcript

This transcript has 3 exons, is annotated with 9 domains and features, is associated with 50 variations and maps to 23 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PHOX2A-001ENST000002982311699284aaENSP00000298231
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8214O14813 NM_005169
NP_005160
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PHOX2A-002ENST0000054631092885aaENSP00000444845
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YGU5 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PHOX2A-003ENST00000544057605No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 3 Coding exons: 3 Transcript length: 1,699 bps Translation length: 284 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS8214

Uniprot

This transcript corresponds to the following Uniprot identifiers: O14813

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000298231.5

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays