Transcript: ENST00000696171.1 CYBB-204

Description

cytochrome b-245 beta chain [Source:HGNC Symbol;Acc:HGNC:2578]

Gene Synonyms

CGD, GP91-PHOX, NOX2

Location

Chromosome X: 37,780,059-37,811,103 forward strand.

About this transcript

This transcript has 12 exons, is annotated with 24 domains and features, is associated with 9827 variant alleles and maps to 364 oligo probes.

Gene

This transcript is a product of gene ENSG00000165168.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000378588.5	CYBB-201	4276	570aa	ENSP00000367851.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14242	A0A0S2Z3S6 P04839	NM_000397.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000696171.1	CYBB-204	1822	538aa	ENSP00000512462.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8Q3SIJ1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000696170.1	CYBB-203	4171	114aa	ENSP00000512461.1	Nonsense mediated decay		A0A8Q3WMA3	-	-
ENST00000696172.1	CYBB-205	558	128aa	ENSP00000512463.1	Nonsense mediated decay		A0A8Q3SIF1	-	-
ENST00000696173.1	CYBB-206	650	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000492288.1	CYBB-202	525	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,822 bps, Translation length: 538 residues

Version

ENST00000696171.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000696171.1 CYBB-204

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Transcript: ENST00000696171.1 CYBB-204

Summary

About Us

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