Description

sequestosome 1 [Source:HGNC Symbol;Acc:11280]

Gene

This transcript is a product of gene ENSG00000161011

This gene has 17 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLength (bp)Protein IDLength (aa)BiotypeCDS incompleteCCDSGENCODE basic
SQSTM1-001ENST000003898052986ENSP00000374455440Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS34317YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
SQSTM1-201ENST000003769292913ENSP00000366128356Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS47355YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
SQSTM1-002ENST000003607182253ENSP00000353944356Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS47355YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
SQSTM1-202ENST000004028742000ENSP00000385553356Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS47355YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
SQSTM1-013ENST000005101871714ENSP00000424477378Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
SQSTM1-015ENST00000514093842ENSP00000427308167Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'--
SQSTM1-003ENST00000422245628ENSP00000394534140Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'--
SQSTM1-017ENST00000504627602ENSP00000425957190Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'--
SQSTM1-016ENST00000508284578ENSP0000042419569Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. ---
SQSTM1-008ENST00000453046572ENSP0000040506173Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. ---
SQSTM1-010ENST000005066902405No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
SQSTM1-011ENST000005122341722No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.---
SQSTM1-014ENST00000506042921No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.---
SQSTM1-004ENST00000481335562No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.---
SQSTM1-005ENST00000464493532No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.---
SQSTM1-007ENST00000466342808No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
SQSTM1-006ENST00000485412656No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
Statistics

Exons: 8 Coding exons: 8 Transcript length: 2,986 bps Translation length: 440 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS34317

Ensembl version

ENST00000389805.4

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:
OTTHUMT00000319344 (version 1)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays