Description

very low density lipoprotein receptor [Source:HGNC Symbol;Acc:HGNC:12698]

Synonyms

CARMQ1, CHRMQ1, VLDLRCH

Location
About this transcript

This transcript has 18 exons, is annotated with 69 domains and features, is associated with 276 variations and maps to 37 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
VLDLR-001ENST000003821009163873aaENSP00000371532
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6446P98155 NM_003383
NP_003374
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P3

PRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

VLDLR-002ENST000003820993240845aaENSP00000371531
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34979P98155 Q5VVF5 NM_001018056
NP_001018066
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1

ALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

VLDLR-005ENST00000382096736173aaENSP00000371528
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5VVF8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

VLDLR-004ENST00000478776510No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 18 Coding exons: 18 Transcript length: 3,240 bps Translation length: 845 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS34979

Uniprot

This transcript corresponds to the following Uniprot identifiers: P98155

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000382099.2

Type

Novel protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays