Description

very low density lipoprotein receptor [Source:HGNC Symbol;Acc:HGNC:12698]

Synonyms

CARMQ1, CHRMQ1, VLDLRCH

Location
Gene

This transcript is a product of gene ENSG00000147852

This gene has 4 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
VLDLR-001ENST000003821009163873 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6446P98155 NM_003383
NP_003374
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI2APPRIS candidate principal isoform (longest CCDS) [01-09-2014]
Glossary entry for APPRIS
APPRIS website
VLDLR-002ENST000003820993240845 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34979A8K0G2 P98155 Q5VVF5
NM_001018056
NP_001018066
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
VLDLR-005ENST00000382096736173 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5VVF8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

VLDLR-004ENST00000478776510No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 18 Coding exons: 18 Transcript length: 3,240 bps Translation length: 845 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS34979

Uniprot

This transcript corresponds to the following Uniprot identifiers: P98155

Transcript Support Level

1

Ensembl version

ENST00000382099.2

Type

Novel protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays