Description

prickle homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17019]

Synonyms

EPM1B, FLJ31937

Location
Gene

This transcript is a product of gene ENSG00000139174

This gene has 9 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
PRICKLE1-001ENST000003451275811831 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8742A0A024R0W7 F8VUG8 F8W1J1
F8W1Q8 Q687H3 Q687H4
Q96MT3
NM_153026
NP_694571
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
PRICKLE1-201ENST000004556974253831 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8742A0A024R0W7 F8VUG8 F8W1J1
F8W1Q8 Q687H3 Q687H4
Q96MT3
NM_001144882
NM_001144883
NP_001138354
NP_001138355
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
PRICKLE1-005ENST000004457664080831 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8742A0A024R0W7 F8VUG8 F8W1J1
F8W1Q8 Q687H3 Q687H4
Q96MT3
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
PRICKLE1-003ENST000005486963584831 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8742A0A024R0W7 F8VUG8 F8W1J1
F8W1Q8 Q687H3 Q687H4
Q96MT3
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
PRICKLE1-004ENST000005522403324831 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8742A0A024R0W7 F8VUG8 F8W1J1
F8W1Q8 Q687H3 Q687H4
Q96MT3
NM_001144881
NP_001138353
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
PRICKLE1-007ENST00000551050693119 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8W1J1 F8W1Q8 Q687H3
Q687H4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PRICKLE1-006ENST00000552108585159 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VUG8 F8W1J1 F8W1Q8
Q687H3 Q687H4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PRICKLE1-002ENST00000547113456110 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8W1Q8 Q687H3 Q687H4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PRICKLE1-008ENST00000552200453No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 8 Coding exons: 7 Transcript length: 4,253 bps Translation length: 831 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS8742

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96MT3

Transcript Support Level

5

Ensembl version

ENST00000455697.3

Type

Known protein coding

Prediction Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays