Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:HGNC Symbol;Acc:HGNC:11102]

Synonyms

HARP, HHARP

About this transcript

This transcript has 18 exons, is annotated with 23 domains and features, is associated with 392 variations and maps to 34 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SMARCAL1-001ENST000003572763271954aaENSP00000349823
 
Protein coding
CCDS2403Q9NZC9 NM_014140
NP_054859
TSL:2GENCODE basicAPPRIS P1
SMARCAL1-003ENST000003582073056954aaENSP00000350940
 
Protein coding
CCDS2403Q9NZC9 NM_001127207
NP_001120679
TSL:1GENCODE basicAPPRIS P1
SMARCAL1-002ENST000003921282431796aaENSP00000375974
 
Protein coding
-H7BYI2 -CDS 5' incompleteTSL:1
SMARCAL1-010ENST00000427645977326aaENSP00000392997
 
Protein coding
-H7C051 -CDS 5' and 3' incompleteTSL:3
SMARCAL1-004ENST00000430374722146aaENSP00000405077
 
Protein coding
-C9J6I8 -CDS 3' incompleteTSL:2
SMARCAL1-006ENST00000444508711130aaENSP00000398969
 
Protein coding
-C9J8F8 -CDS 3' incompleteTSL:2
SMARCAL1-007ENST0000043443554492aaENSP00000402967
 
Protein coding
-C9JP32 -CDS 3' incompleteTSL:4
SMARCAL1-009ENST00000412913538141aaENSP00000390248
 
Protein coding
-C9JHQ1 -CDS 3' incompleteTSL:4
SMARCAL1-012ENST00000445153484162aaENSP00000400473
 
Protein coding
-H7C1I3 -CDS 5' and 3' incompleteTSL:5
SMARCAL1-005ENST0000042581531019aaENSP00000394410
 
Protein coding
-C9JS37 -CDS 3' incompleteTSL:3
SMARCAL1-011ENST00000479008633No protein-
 
Processed transcript
---TSL:3
SMARCAL1-013ENST00000486983793No protein-
 
Retained intron
---TSL:2
SMARCAL1-008ENST00000496037542No protein-
 
Retained intron
---TSL:4
Statistics

Exons: 18 Coding exons: 16 Transcript length: 3,056 bps Translation length: 954 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS2403

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZC9

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000358207.9

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays