Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1 [Source:HGNC Symbol;Acc:HGNC:11102]

Synonyms

HARP, HHARP

Gene

This transcript is a product of gene ENSG00000138375

This gene has 13 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
SMARCAL1-001ENST000003572763271 bp954 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2403C9J6I8 C9J8F8 C9JHQ1
C9JP32 Q9NZC9
NM_014140
NP_054859
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SMARCAL1-003ENST000003582073056 bp954 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2403C9J6I8 C9J8F8 C9JHQ1
C9JP32 Q9NZC9
NM_001127207
NP_001120679
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SMARCAL1-002ENST000003921282431 bp796 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JHQ1 H7BYI2 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SMARCAL1-010ENST00000427645977 bp326 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7C051 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
SMARCAL1-004ENST00000430374722 bp146 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J6I8 C9J8F8 C9JP32
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SMARCAL1-006ENST00000444508711 bp130 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J8F8 C9JP32 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SMARCAL1-007ENST00000434435544 bp92 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JP32 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SMARCAL1-009ENST00000412913538 bp141 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JHQ1 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SMARCAL1-012ENST00000445153484 bp162 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
SMARCAL1-005ENST00000425815310 bp19 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SMARCAL1-011ENST00000479008633 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SMARCAL1-013ENST00000486983793 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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SMARCAL1-008ENST00000496037542 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 18 Coding exons: 16 Transcript length: 3,056 bps Translation length: 954 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS2403

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NZC9

Ensembl version

ENST00000358207.6

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays