Transcript: ENST00000405465.3 DGCR6L-202

Description

DiGeorge syndrome critical region gene 6 like [Source:HGNC Symbol;Acc:HGNC:18551]

Gene Synonyms

FLJ10666

Location

Chromosome 22: 20,314,283-20,320,009 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 2694 variant alleles and maps to 344 oligo probes.

Gene

This transcript is a product of gene ENSG00000128185.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000248879.8	DGCR6L-201	1172	220aa	ENSP00000248879.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13778	Q9BY27	NM_033257.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000405465.3	DGCR6L-202	962	182aa	ENSP00000386052.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B5MCQ4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000443409.1	DGCR6L-203	935	97aa	ENSP00000403341.1	Nonsense mediated decay		F8WCX1	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 962 bps, Translation length: 182 residues

Transcript Support Level (TSL)

TSL:3

Version

ENST00000405465.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000405465.3 DGCR6L-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000405465.3 DGCR6L-202

Summary

About Us

Get help

Our sister sites

Follow us