Transcript: ENST00000494304.1 LYZL1-202

Description

lysozyme like 1 [Source:HGNC Symbol;Acc:HGNC:30502]

Gene Synonyms

LYC2, MGC33408

Location

Chromosome 10: 29,291,925-29,318,328 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 1 domain and feature, is associated with 11713 variant alleles and maps to 269 oligo probes.

Gene

This transcript is a product of gene ENSG00000120563.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000649382.2	LYZL1-203	806	148aa	ENSP00000498092.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31174	Q6UWQ5-1	NM_032517.6	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000375500.8	LYZL1-201	811	194aa	ENSP00000364650.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6UWQ5-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000494304.1	LYZL1-202	637	106aa	ENSP00000434629.1	Nonsense mediated decay		H0YDZ2	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 637 bps, Translation length: 106 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000494304.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000494304.1 LYZL1-202

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Transcript: ENST00000494304.1 LYZL1-202

Summary

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