Description

neutrophil cytosolic factor 2 [Source:HGNC Symbol;Acc:HGNC:7661]

Synonyms

NOXA2, p67phox

Gene

This transcript is a product of gene ENSG00000116701

This gene has 7 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
NCF2-201ENST000004137202276481 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS53447B1ALB6 B1ALB7 P19878
Q0Q616
NM_001190794
NP_001177723
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
NCF2-002ENST000003675352226526 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1356B1ALB6 B1ALB7 P19878
Q0Q616
NM_000433
NP_000424
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
NCF2-001ENST000003675362203526 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1356B1ALB6 B1ALB7 P19878
Q0Q616
NM_001127651
NP_001121123
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
NCF2-202ENST000004180892168445 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS53446B1ALB6 B1ALB7 P19878
Q0Q616
NM_001190789
NP_001177718
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
NCF2-004ENST00000419402584143 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1ALB7 Q0Q616 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

NCF2-005ENST0000042055337656 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1ALB6 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

NCF2-003ENST00000469280758No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 15 Coding exons: 15 Transcript length: 2,226 bps Translation length: 526 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS1356

Uniprot

This transcript corresponds to the following Uniprot identifiers: P19878

Transcript Support Level

1

Ensembl version

ENST00000367535.5

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays