Description

apolipoprotein A-V [Source:HGNC Symbol;Acc:HGNC:17288]

Synonyms

APOA-V, RAP3

About this transcript

This transcript has 4 exons, is annotated with 5 domains and features, is associated with 62 variations and maps to 15 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
APOA5-201ENST000005424991929366aaENSP00000445002
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8376Q6Q788 NM_001166598
NM_052968
NP_001160070
NP_443200
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

APOA5-001ENST000002276651897366aaENSP00000227665
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8376Q6Q788 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

APOA5-002ENST00000433069526162aaENSP00000399701
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JZZ0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 4 Coding exons: 3 Transcript length: 526 bps Translation length: 162 residues

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000433069.1

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays