Description

LIM homeobox 6 [Source:HGNC Symbol;Acc:HGNC:21735]

Synonyms

LHX6.1

Gene

This transcript is a product of gene ENSG00000106852

This gene has 12 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
LHX6-008ENST000005598953587 bp176 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS59144H0YMY8 Q9UPM6 NM_001242335
NP_001229264
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-001ENST000003943193465 bp392 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6838H0YMH3 H0YMY8 Q3SY65
Q9UPM6
NM_014368
NP_055183
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-006ENST000003405873457 bp377 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6837H0YKH7 H0YMH3 Q9UPM6
NM_199160
NP_954629
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-002ENST000003737553384 bp363 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56583H0YMH3 H0YMY8 Q3SY65
Q9UPM6
NM_001242334
NP_001229263
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-009ENST000005413972942 bp366 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56584H0YKH7 H0YMH3 Q9UPM6
NM_001242333
NP_001229262
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-003ENST000003737543278 bp348 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YKH7 H0YMH3 Q9UPM6
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-004ENST00000482062918 bp50 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YMY8 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-011ENST00000560485736 bp34 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YMH3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
LHX6-005ENST00000464484666 bp35 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YKH7 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-010ENST00000559529550 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
LHX6-007ENST00000558672592 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
LHX6-012ENST00000560152582 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 7 Coding exons: 6 Transcript length: 3,587 bps Translation length: 176 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS59144

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UPM6

Ensembl version

ENST00000559895.2

Type

Known protein coding

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays