Description

LIM homeobox 6 [Source:HGNC Symbol;Acc:HGNC:21735]

Synonyms

LHX6.1

Gene

This transcript is a product of gene ENSG00000106852

This gene has 12 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
LHX6-008ENST000005598953587 bp176 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS59144H0YMY8 Q9UPM6 NM_001242335
NP_001229264
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-001ENST000003943193465 bp392 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6838H0YMH3 H0YMY8 Q3SY65
Q9UPM6
NM_014368
NP_055183
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-006ENST000003405873457 bp377 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6837H0YKH7 H0YMH3 Q9UPM6
NM_199160
NP_954629
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-002ENST000003737553384 bp363 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56583H0YMH3 H0YMY8 Q3SY65
Q9UPM6
NM_001242334
NP_001229263
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-009ENST000005413972942 bp366 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56584H0YKH7 H0YMH3 Q9UPM6
NM_001242333
NP_001229262
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-003ENST000003737543278 bp348 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YKH7 H0YMH3 Q9UPM6
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-004ENST00000482062918 bp50 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YMY8 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-011ENST00000560485736 bp34 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YMH3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
LHX6-005ENST00000464484666 bp35 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YKH7 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LHX6-010ENST00000559529550 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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LHX6-007ENST00000558672592 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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LHX6-012ENST00000560152582 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 10 Coding exons: 10 Transcript length: 3,465 bps Translation length: 392 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS6838

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UPM6

Ensembl version

ENST00000394319.5

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays