Description

DnaJ (Hsp40) homolog, subfamily C, member 5 [Source:HGNC Symbol;Acc:HGNC:16235]

Synonyms

CLN4, DNAJC5A, FLJ00118, FLJ13070

Location
About this transcript

This transcript has 5 exons, is annotated with 11 domains and features, is associated with 71 variations and maps to 26 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
DNAJC5-001ENST000003608645213198aaENSP00000354111
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS13546Q9H3Z4 NM_025219
NP_079495
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
DNAJC5-002ENST000004705515287167aaENSP00000434744
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-Q9H3Z4 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 5 Coding exons: 4 Transcript length: 5,213 bps Translation length: 198 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS13546

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H3Z4

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000360864.7

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays