Description

cochlin [Source:HGNC Symbol;Acc:HGNC:2180]

Synonyms

COCH-5B2, DFNA31, DFNA9

Location
Gene

This transcript is a product of gene ENSG00000100473

This gene has 11 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
COCH-005ENST000003966182536 bp550 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS9640G3V4C4 G3V5G6 O43405
NM_004086
NP_004077
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COCH-006ENST000002163612397 bp550 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS9640G3V4C4 G3V5G6 O43405
NM_001135058
NP_001128530
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COCH-007ENST000004605812688 bp438 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3V4C4 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COCH-008ENST000004688262129 bp434 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7EN67 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
COCH-003ENST000004750871997 bp494 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3V5G6 Q96IU6 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COCH-011ENST00000555881782 bp202 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3V5X3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
COCH-012ENST00000556908775 bp193 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-G3V5V4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
COCH-014ENST00000557065654 bp55 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H0YJJ0 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
COCH-010ENST00000553772554 bp80 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-G3V5G6 -
COCH-013ENST00000553833635 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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COCH-009ENST00000555117619 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 11 Coding exons: 11 Transcript length: 1,997 bps Translation length: 494 residues

Ensembl version

ENST00000475087.2

Type

Putative protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays