Description

polymerase (RNA) III (DNA directed) polypeptide B [Source:HGNC Symbol;Acc:HGNC:30348]

Synonyms

FLJ10388, RPC2

About this transcript

This transcript has 28 exons, is annotated with 8 domains and features, is associated with 293 variations and maps to 11 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
POLR3B-001ENST0000022834742731133aaENSP00000228347
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS9105Q9NW08 NM_018082
NP_060552
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
POLR3B-003ENST0000053906641181075aaENSP00000445721
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS53824Q9NW08 NM_001160708
NP_001154180
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
POLR3B-004ENST00000549569580170aaENSP00000448398
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VRU2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

POLR3B-005ENST00000549195582No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 28 Coding exons: 25 Transcript length: 4,118 bps Translation length: 1,075 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS53824

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NW08

Transcript Support Level (TSL)

TSL:2

Ensembl version

ENST00000539066.4

Type

Putative protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays