Description

paired box 6 [Source:HGNC Symbol;Acc:HGNC:8620]

Synonyms

AN, AN2, D11S812E, WAGR

Location
Gene

This transcript is a product of gene ENSG00000007372

This gene has 31 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
PAX6-201ENST000004190226922 bp436 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS31452B1B1I8 B1B1I9 E5LBD7
F1T0F8 P26367 Q6VMP0
NM_001258462
NP_001245391
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PAX6-202ENST000006063776860 bp436 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS31452B1B1I8 B1B1I9 E5LBD7
F1T0F8 Q6VMP0
NM_001258463
NP_001245392
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PAX6-009ENST000003791292616 bp436 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS31452B1B1I8 B1B1I9 E5LBD7
F1T0F8 P26367 Q6VMP0
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PAX6-011ENST000003791072591 bp436 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS31452B1B1I8 B1B1I9 E5LBD7
F1T0F8 P26367 Q6VMP0
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PAX6-008ENST000003791322574 bp422 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS31451B1B1I8 D3DQZ8 E5LBD7
E9PKM0 P26367 Q66SS1
Q6VMP0
NM_001127612
NP_001121084
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PAX6-003ENST000003791232160 bp422 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS31451B1B1I8 D3DQZ8 E5LBD7
E9PKM0 P26367 Q66SS1
Q6VMP0
NM_000280
NM_001258464
NP_000271
NP_001245393
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PAX6-001ENST000003791151763 bp436 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS31452B1B1I8 B1B1I9 E5LBD7
F1T0F8 P26367 Q6VMP0
NM_001604
NP_001595
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PAX6-002ENST000002410011631 bp422 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS31451B1B1I8 D3DQZ8 E5LBD7
E9PKM0 P26367 Q66SS1
Q6VMP0
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PAX6-005ENST000003791111627 bp422 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS31451B1B1I8 D3DQZ8 E5LBD7
E9PKM0 P26367 Q66SS1
Q6VMP0
NM_001258465
NP_001245394
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PAX6-004ENST000003791092157 bp422 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1B1I8 D3DQZ8 E5LBD7
E9PKM0 P26367 Q66SS1
Q6VMP0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
PAX6-020ENST00000525535677 bp2 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
PAX6-021ENST00000524853574 bp58 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1B1I8 E9PKM0 Q6VMP0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
PAX6-012ENST00000423822567 bp62 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1B1I8 B1B1I9 Q6VMP0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
PAX6-016ENST00000455099497 bp124 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1B1I8 B1B1I9 B1B1J0
Q6VMP0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
PAX6-013ENST00000438681455 bp39 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1B1I8 Q6VMP0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
PAX6-029ENST00000533156847 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PAX6-014ENST00000471303782 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PAX6-027ENST00000531910643 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PAX6-015ENST00000481563613 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PAX6-028ENST00000530373572 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PAX6-025ENST00000530714567 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PAX6-024ENST00000534353540 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
PAX6-019ENST000005333336173 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PAX6-006ENST000004700272842 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PAX6-007ENST000004943772460 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PAX6-010ENST00000464174979 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PAX6-017ENST00000474783702 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PAX6-030ENST00000532916627 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PAX6-026ENST00000534390578 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PAX6-023ENST00000532175524 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
PAX6-022ENST00000527769487 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 13 Coding exons: 10 Transcript length: 2,160 bps Translation length: 422 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS31451

Uniprot

This transcript corresponds to the following Uniprot identifiers: P26367

Ensembl version

ENST00000379123.6

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays