Description

archain 1 [Source:HGNC Symbol;Acc:HGNC:649]

Synonyms

COPD

INSDC coordinates

chromosome:GRCh38:CM000673.2:118572390:118603033:1

About this gene

This gene has 5 transcripts (splice variants), 72 orthologues, is a member of 2 Ensembl protein families and is associated with 56 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
ARCN1-001ENST000002640283845511aaENSP00000264028
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8400B0YIW5 P48444 NM_001655
NP_001646
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
ARCN1-004ENST000003928591709423aaENSP00000376599
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44749P48444 NM_001142281
NP_001135753
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ARCN1-003ENST000003594154038552aaENSP00000352385
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B0YIW6 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ARCN1-201ENST000006144982238189aaENSP00000482114
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q6P1Q5 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ARCN1-002ENST00000534182166983aaENSP00000431676
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PK34 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Gene-based displays