Description

nuclear paraspeckle assembly transcript 1 (non-protein coding) [Source:HGNC Symbol;Acc:HGNC:30815]

Synonyms

LINC00084, MENepsilon/beta, NCRNA00084, TncRNA, VINC

Location
INSDC coordinates

chromosome:GRCh38:CM000673.2:65422774:65445540:1

Transcripts



This gene has 5 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSRefSeqFlags
NEAT1-001ENST0000050112222743No protein
 
LincRNALarge intergenic non-coding RNAs, usually associated with open chromatin signatures such as histone modification sites.
-NR_028272
NR_030343
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
NEAT1-002ENST000004997321811No protein
 
LincRNALarge intergenic non-coding RNAs, usually associated with open chromatin signatures such as histone modification sites.
--TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

NEAT1-003ENST00000612303572No protein
 
LincRNALarge intergenic non-coding RNAs, usually associated with open chromatin signatures such as histone modification sites.
--TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

NEAT1-005ENST00000601801487No protein
 
LincRNALarge intergenic non-coding RNAs, usually associated with open chromatin signatures such as histone modification sites.
--TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

NEAT1-004ENST00000616315483No protein
 
LincRNALarge intergenic non-coding RNAs, usually associated with open chromatin signatures such as histone modification sites.
--TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays