Description

histone cluster 1, H2bn [Source:HGNC Symbol;Acc:HGNC:4749]

Synonyms

H2B/d, H2BFD

Location
INSDC coordinates

chromosome:GRCh38:CM000668.2:27837760:27865798:1

About this gene

This gene has 4 transcripts (splice variants), 153 orthologues, 17 paralogues, is a member of 1 Ensembl protein family and is associated with 19 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
HIST1H2BN-001ENST000006128981723126aaENSP00000483903
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4633A0A024RCJ9 Q99877 NM_003520
NP_003511
TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

HIST1H2BN-003ENST000006066134137166aaENSP00000475942
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-U3KQK0 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HIST1H2BN-201ENST00000396980432126aaENSP00000380177
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A024RCJ9 Q99877 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

HIST1H2BN-002ENST00000449538715126aaENSP00000446031
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
CCDS4633A0A024RCJ9 Q99877 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays