Description

G patch domain and ankyrin repeats 1 [Source:HGNC Symbol;Acc:HGNC:13920]

Synonyms

ANKRD59, BAT4, D6S54E, G5, GPATCH10

Location

Chromosome 6: 31,661,229-31,666,283 reverse strand.

View alleles of this gene on alternate assemblies

INSDC coordinates

chromosome:GRCh38:CM000668.2:31661229:31666283:1

About this gene

This gene has 8 transcripts (splice variants), 6 gene alleles, 49 orthologues, is a member of 1 Ensembl protein family and is associated with 30 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
GPANK1-003ENST000003759062793356aaENSP00000365071
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4711A0A024RCU2 O95872 NM_001199237
NP_001186166
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
GPANK1-005ENST000003758961910356aaENSP00000365060
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4711A0A024RCU2 O95872 NM_033177
NP_149417
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
GPANK1-001ENST000003759001814356aaENSP00000365065
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4711A0A024RCU2 O95872 NM_001199238
NM_001199239
NP_001186167
NP_001186168
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
GPANK1-002ENST000003758951800356aaENSP00000365059
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4711A0A024RCU2 O95872 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
GPANK1-004ENST000003758931598356aaENSP00000365057
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4711A0A024RCU2 O95872 NM_001199240
NP_001186169
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
GPANK1-009ENST00000445768822152aaENSP00000409349
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6QYZ9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GPANK1-008ENST00000458083802165aaENSP00000395307
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A0MSL4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GPANK1-010ENST0000045654062790aaENSP00000395484
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0A0MSL5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays